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Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium. / Tortoli, Enrico; Meehan, Conor J.; Grottola, Antonella; Serpini, Giulia Fregni; Fabio, Anna; Trovato, Alberto; Pecorari, Monica; Cirillo, Daniela M.

In: Infection, Genetics and Evolution, Vol. 75, 103983, 2019.

Onderzoeksoutput: Bijdrage aan tijdschriftA1: Web of Science-artikelOnderzoekpeer review

Harvard

Tortoli, E, Meehan, CJ, Grottola, A, Serpini, GF, Fabio, A, Trovato, A, Pecorari, M & Cirillo, DM 2019, 'Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium' Infection, Genetics and Evolution, vol. 75, 103983. https://doi.org/10.1016/j.meegid.2019.103983

APA

Tortoli, E., Meehan, C. J., Grottola, A., Serpini, G. F., Fabio, A., Trovato, A., ... Cirillo, D. M. (2019). Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium. Infection, Genetics and Evolution, 75, [103983]. https://doi.org/10.1016/j.meegid.2019.103983

Vancouver

Tortoli E, Meehan CJ, Grottola A, Serpini GF, Fabio A, Trovato A et al. Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium. Infection, Genetics and Evolution. 2019;75. 103983. https://doi.org/10.1016/j.meegid.2019.103983

Author

Tortoli, Enrico ; Meehan, Conor J. ; Grottola, Antonella ; Serpini, Giulia Fregni ; Fabio, Anna ; Trovato, Alberto ; Pecorari, Monica ; Cirillo, Daniela M. / Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium. In: Infection, Genetics and Evolution. 2019 ; Vol. 75.

BibTeX

@article{759ed939a7e644e2a894d8b6c358b896,
title = "Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium",
abstract = "The aim of this study was to clarify the taxonomic status of named species within the genus Mycobacterium. The analysis of genomes belonging to 174 taxa (species or subspecies) of the genus Mycobacterium was conducted using both the Average Nucleotide Identity and the Genome to Genome Distance. A number of synonymous taxa were detected. The list of synonyms includes: two subspecies of M. chelonae (M. chelonae subsp. bovis and M. chelonae subsp. gwanakae), two subspecies of M. fortuitum (M. fortuitum subsp. fortuitum and M. fortuitum subsp. acetamidolyticum), four subspecies of M. avium (M. avium subsp. avium, M. avium subsp. silvaticum, M. avium subsp. paratuberculosis and {"}M. avium subsp. hominissuis{"}), two couples of subspecies of M. intracellulare (M. intracellulare subsp. intracellulare/M. intracellulare subsp. paraintracellulare and M. intracellulare subsp. chimaera/M. intracellulare subsp. yongonense), the species M. austroafricanum and M. vanbaalenii, the species M. senegalense and M. conceptionense, the species M. talmoniae and M. eburneum and the species M. marinum, M. ulcerans and M. pseudoshottsii. Furthermore one species were reclassified as subspecies of another mycobacterium: M. lepraemurium was reclassified as a subspecies of M. avium (M. avium subsp. lepraemurium). The updates to nomenclature are proposed basing on the priority of names according the Code of nomenclature of prokaryotes. For two species (M. bouchedurhonense and M. marseillense) the loss of standing in nomenclature is proposed because of unavailability of respective type strains in culture collections.",
keywords = "Mycobacterium, Taxonomy, Synonymous taxa, Average nucleotide identity, Genome to genome distance, SP NOV., EMENDED DESCRIPTION, SUBSP AVIUM, NOMENCLATURE, DESIGNATION, SEQUENCE, PROPOSAL, COMPLEX, BOVIS",
author = "Enrico Tortoli and Meehan, {Conor J.} and Antonella Grottola and Serpini, {Giulia Fregni} and Anna Fabio and Alberto Trovato and Monica Pecorari and Cirillo, {Daniela M.}",
note = "CPDF",
year = "2019",
doi = "10.1016/j.meegid.2019.103983",
language = "English",
volume = "75",
journal = "Infection, Genetics and Evolution",
issn = "1567-1348",
publisher = "Elsevier",

}

RIS

TY - JOUR

T1 - Genome-based taxonomic revision detects a number of synonymous taxa in the genus Mycobacterium

AU - Tortoli, Enrico

AU - Meehan, Conor J.

AU - Grottola, Antonella

AU - Serpini, Giulia Fregni

AU - Fabio, Anna

AU - Trovato, Alberto

AU - Pecorari, Monica

AU - Cirillo, Daniela M.

N1 - CPDF

PY - 2019

Y1 - 2019

N2 - The aim of this study was to clarify the taxonomic status of named species within the genus Mycobacterium. The analysis of genomes belonging to 174 taxa (species or subspecies) of the genus Mycobacterium was conducted using both the Average Nucleotide Identity and the Genome to Genome Distance. A number of synonymous taxa were detected. The list of synonyms includes: two subspecies of M. chelonae (M. chelonae subsp. bovis and M. chelonae subsp. gwanakae), two subspecies of M. fortuitum (M. fortuitum subsp. fortuitum and M. fortuitum subsp. acetamidolyticum), four subspecies of M. avium (M. avium subsp. avium, M. avium subsp. silvaticum, M. avium subsp. paratuberculosis and "M. avium subsp. hominissuis"), two couples of subspecies of M. intracellulare (M. intracellulare subsp. intracellulare/M. intracellulare subsp. paraintracellulare and M. intracellulare subsp. chimaera/M. intracellulare subsp. yongonense), the species M. austroafricanum and M. vanbaalenii, the species M. senegalense and M. conceptionense, the species M. talmoniae and M. eburneum and the species M. marinum, M. ulcerans and M. pseudoshottsii. Furthermore one species were reclassified as subspecies of another mycobacterium: M. lepraemurium was reclassified as a subspecies of M. avium (M. avium subsp. lepraemurium). The updates to nomenclature are proposed basing on the priority of names according the Code of nomenclature of prokaryotes. For two species (M. bouchedurhonense and M. marseillense) the loss of standing in nomenclature is proposed because of unavailability of respective type strains in culture collections.

AB - The aim of this study was to clarify the taxonomic status of named species within the genus Mycobacterium. The analysis of genomes belonging to 174 taxa (species or subspecies) of the genus Mycobacterium was conducted using both the Average Nucleotide Identity and the Genome to Genome Distance. A number of synonymous taxa were detected. The list of synonyms includes: two subspecies of M. chelonae (M. chelonae subsp. bovis and M. chelonae subsp. gwanakae), two subspecies of M. fortuitum (M. fortuitum subsp. fortuitum and M. fortuitum subsp. acetamidolyticum), four subspecies of M. avium (M. avium subsp. avium, M. avium subsp. silvaticum, M. avium subsp. paratuberculosis and "M. avium subsp. hominissuis"), two couples of subspecies of M. intracellulare (M. intracellulare subsp. intracellulare/M. intracellulare subsp. paraintracellulare and M. intracellulare subsp. chimaera/M. intracellulare subsp. yongonense), the species M. austroafricanum and M. vanbaalenii, the species M. senegalense and M. conceptionense, the species M. talmoniae and M. eburneum and the species M. marinum, M. ulcerans and M. pseudoshottsii. Furthermore one species were reclassified as subspecies of another mycobacterium: M. lepraemurium was reclassified as a subspecies of M. avium (M. avium subsp. lepraemurium). The updates to nomenclature are proposed basing on the priority of names according the Code of nomenclature of prokaryotes. For two species (M. bouchedurhonense and M. marseillense) the loss of standing in nomenclature is proposed because of unavailability of respective type strains in culture collections.

KW - Mycobacterium

KW - Taxonomy

KW - Synonymous taxa

KW - Average nucleotide identity

KW - Genome to genome distance

KW - SP NOV.

KW - EMENDED DESCRIPTION

KW - SUBSP AVIUM

KW - NOMENCLATURE

KW - DESIGNATION

KW - SEQUENCE

KW - PROPOSAL

KW - COMPLEX

KW - BOVIS

U2 - 10.1016/j.meegid.2019.103983

DO - 10.1016/j.meegid.2019.103983

M3 - A1: Web of Science-article

VL - 75

JO - Infection, Genetics and Evolution

JF - Infection, Genetics and Evolution

SN - 1567-1348

M1 - 103983

ER -

ID: 3219415