1. Ethical considerations for movement mapping to identify disease transmission hotspots. / de Jong, Bouke C; Gaye, Badou M; Luyten, Jeroen; van Buitenen, Bart; André, Emmanuel; Meehan, Conor J; O'Siochain, Cian; Tomsu, Kristyna; Urbain, Jérôme; Grietens, Koen Peeters; Njue, Maureen; Pinxten, Wim; Gehre, Florian; Nyan, Ousman; Buvé, Anne; Roca, Anna; Ravinetto, Raffaella; Antonio, Martin.

    In: Emerging Infectious Diseases, Vol. 25, No. 7, 2019.

    Research output: Contribution to journalA1: Web of Science-articleResearchpeer-review

  2. GWAS for quantitative resistance phenotypes in Mycobacterium tuberculosis reveals resistance genes and regulatory regions. / Farhat, Maha R; Freschi, Luca; Calderon, Roger; Ioerger, Thomas; Snyder, Matthew; Meehan, Conor J; de Jong, Bouke; Rigouts, Leen; Sloutsky, Alex; Kaur, Devinder; Sunyaev, Shamil; van Soolingen, Dick; Shendure, Jay; Sacchettini, Jim; Murray, Megan.

    In: Nature Communications, Vol. 10, No. 1, 2128, 2019.

    Research output: Contribution to journalA1: Web of Science-articleResearchpeer-review

  3. Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues. / Meehan, Conor J; Goig, Galo A; Kohl, Thomas A; Verboven, Lennert; Dippenaar, Anzaan; Ezewudo, Matthew; Farhat, Maha R; Guthrie, Jennifer L; Laukens, Kris; Miotto, Paolo; Ofori-Anyinam, Boatema; Dreyer, Viola; Supply, Philip; Suresh, Anita; Utpatel, Christian; van Soolingen, Dick; Zhou, Yang; Ashton, Philip M; Brites, Daniela; Cabibbe, Andrea M; de Jong, Bouke C; de Vos, Margaretha; Menardo, Fabrizio; Gagneux, Sebastien; Gao, Qian; Heupink, Tim H; Liu, Qingyun; Loiseau, Chloé; Rigouts, Leen; Rodwell, Timothy C; Tagliani, Elisa; Walker, Timothy M; Warren, Robin M; Zhao, Yanlin; Zignol, Matteo; Schito, Marco; Gardy, Jennifer; Cirillo, Daniela M; Niemann, Stefan; Comas, Inaki; Van Rie, Annelies.

    In: Nature Reviews Microbiology, Vol. 17, No. 9, 2019, p. 533-545.

    Research output: Contribution to journalA1: Web of Science-articleResearchpeer-review

  4. Bridging the TB data gap: in silico extraction of rifampicin-resistant tuberculosis diagnostic test results from whole genome sequence data. / Ng, Kamela C. S.; Ngabonziza, Jean Claude S.; Lempens, Pauline; de Jong, Bouke C.; van Leth, Frank; Meehan, Conor J.

    In: Peerj, Vol. 7, 7564, 2019.

    Research output: Contribution to journalA1: Web of Science-articleResearchpeer-review

  5. The repetitive element RLEP is a highly specific target for detection of Mycobacterium leprae. / Braet, S.; Vandelannoote, K.; Meehan, C. J.; Fontes, A. N. Brum; Hasker, E.; Rosa, P. S.; Lucena-Silva, N.; Rigouts, L.; Suffys, P. N.; De Jong, B. C.

    In: Journal of Clinical Microbiology, Vol. 56, No. 3, UNSP e01924-17, 2018.

    Research output: Contribution to journalLetterResearchpeer-review

  6. Comparative genomics showsmigration and expansion has preceded the rise of Buruli ulcer in south-eastern Australia. / Buultjens, Andrew H; Vandelannoote, Koen; Meehan, Conor J; Eddyani, Miriam; de Jong, Bouke C; Fyfe, Janet A M; Globan, Maria; Tobias, Nicholas J; Porter, Jessica L; Tomita, Takehiro; Tay, Ee Laine; Seemann, Torsten; Howden, Benjamin P; Johnson, Paul D R; Stinear, Timothy P.

    In: Applied and Environmental Microbiology, Vol. 84, No. 8, e02612-17, 2018.

    Research output: Contribution to journalA1: Web of Science-articleResearchpeer-review

  7. Genome wide association study of Mycobacterium tuberculosis reveals multiple novel genes associated with large increase in drug minimum inhibitory concentrations. / Farhat, M. R.; Calderon, R.; Ioerger, T.; Snyder, M.; Meehan, C.; de Jong, B.; Rigouts, L.; Sloutsky, A.; Kaur, D.; van Soolingen, D.; Shendure, J.; Sacchettini, J.; Murray, M.

    In: American Journal of Respiratory and Critical Care Medicine, Vol. 197, 2018.

    Research output: Contribution to journalConference abstract in journalResearch

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